# GNU Emacs configuration file
#
# Balaji S. Srinivasan <balajis_at_stanford_dot_edu>
# This file can be found at http://jinome.stanford.edu/stat366/unix/.emacs
# Modified to include examples of loading ESS and matlab.el to allow interactive processing of R/Matlab code

(custom-set-variables
  ;; custom-set-variables was added by Custom -- don't edit or cut/paste it!
  ;; Your init file should contain only one such instance.
 '(auto-compression-mode t nil (jka-compr))
 '(case-fold-search t)
 '(current-language-environment "UTF-8")
 '(default-input-method "rfc1345")
 ;;'(global-font-lock-mode t nil (font-lock))
 '(show-paren-mode t nil (paren))
 '(text-mode-hook (quote (turn-on-auto-fill text-mode-hook-identify)))
 '(transient-mark-mode t)
 '(uniquify-buffer-name-style (quote forward) nil (uniquify)))
(custom-set-faces
  ;; custom-set-faces was added by Custom -- don't edit or cut/paste it!
  ;; Your init file should contain only one such instance.
 )

(cond ((fboundp 'global-font-lock-mode)
       ;; Customize face attributes
       (setq font-lock-face-attributes
             ;; Symbol-for-Face Foreground Background Bold Italic Underline
             '(
;;	       (font-lock-comment-face       "Red")
;;             (font-lock-string-face        "LightGreen")
;;             (font-lock-keyword-face       "LightBlue")
;;             (font-lock-function-name-face "Blue")
               (font-lock-variable-name-face "Blue")
;;             (font-lock-type-face          "Black")
;;             (font-lock-reference-face     "DarkGreen")
               ))
       ;; Load the font-lock package.
       (require 'font-lock)
       ;; Maximum colors
       (setq font-lock-maximum-decoration t)
       ;; Turn on font-lock in all modes that support it
       (global-font-lock-mode t)))


;;Set Undo to C-o because of OS X weirdness  <-- mainly useful if you're on OS X
;;(global-set-key [(ctrl o)] 'undo)

;;LOAD EMACS DESKTOP
;;This allows easy restoration of previous workspace
(load "desktop")
(desktop-load-default)
(desktop-read)

;;LOAD ESS 
;;You can get ESS from http://ess.r-project.org/
;;Uncomment and modify the below load code to point to the ess-site subdirectory of the ESS file
;;(load "~/downloads/ess-5.3.0/lisp/ess-site")

;;LOAD MATLAB EDITOR STUFF
;;You can get the Matlab major mode file from:  http://www.mathworks.com/matlabcentral/files/104/matlab.el
;;See also: http://www2.imm.dtu.dk/~kas/software/emacs/
;;You can use the below block or you can make your own from the above links

;;(setq matlab-shell-command-switches '("-nojvm -glnx86 -nosplash -nojvm"))
;;(load "~/matlab.el")  
;;(autoload 'matlab-mode "matlab" "Enter MATLAB mode." t)
;;(setq auto-mode-alist (cons '("\\.m\\'" . matlab-mode) auto-mode-alist))
;;(autoload 'matlab-shell "matlab" "Interactive MATLAB mode." t)

;;User Level customizations (You need not use them all):
;; (setq matlab-indent-function t)    ; if you want function bodies indented
;; (setq matlab-verify-on-save-flag nil) ; turn off auto-verify on save
;; (defun my-matlab-mode-hook ()
;;     (setq fill-column 76))           ; where auto-fill should wrap
;; (add-hook 'matlab-mode-hook 'my-matlab-mode-hook)
;;    (defun my-matlab-shell-mode-hook ()
;;       '())
;;    (add-hook 'matlab-shell-mode-hook 'my-matlab-shell-mode-hook)